Scaffold Ga0164293_10371606

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0164293_10371606

Scaffold Ga0164293_10371606

Overview

Basic Information
Taxon OID	3300013004 Open in IMG/M
Scaffold ID	Ga0164293_10371606 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	970
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050890	Metagenome	144	Y
F070862	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_103716062	F050890	AGGAGG	MSYDSDFESVYMVEFVSGRVIHVGQFTVQDVIEYCADEHEGEVIKSIYEEVYAGEVEDA*
Ga0164293_103716065	F070862	AGGAGG	MPNYFVVFTEESTKDHGYYVEAKNKTEAYIKAEEKYFNHQDADIVSTGYA

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