NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164292_10087641

Scaffold Ga0164292_10087641


Overview

Basic Information
Taxon OID3300013005 Open in IMG/M
Scaffold IDGa0164292_10087641 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2368
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003378Metagenome / Metatranscriptome490Y
F006986Metagenome360Y
F020354Metagenome224Y
F021759Metagenome217N
F031461Metagenome182N

Sequences

Protein IDFamilyRBSSequence
Ga0164292_100876412F006986N/AVTVVLVTWHDAHSGAESWINIKDLDTEPAEVESVGFLLATSDGGKPDHVTLYQSRNEDSVDHVLHIPVGMVKAIKVLMDLEINTSDR*
Ga0164292_100876413F021759AGAAGGMDAGLATVLAAAIATFGGMIVAIMQLRGFREENREDHAVVQKRLDNLIDMVGKQGAKLTSHLDWHLTTKEPSKDPKVKQVATRKKK*
Ga0164292_100876415F003378GGAGMVEEVKINKQNPTIAKFLDLSQRLMSLFLARALPAVTGGAIIGVSVSKAAILAGAMAVLEVVQKLAAASTDGDLTSEEIKEAFNGAKKK*
Ga0164292_100876416F020354AGAAGMFTKLKNELFALGFTLGASAITIMTLSGTVQNWALFFTFLSLALHLTGVLTKDGE*
Ga0164292_100876417F031461N/AEQILTTALSSDQAVSIASSPEVLAAVTEEQAEAIFEEIVVEELSAEVAEELVEVLNEAPTKVKQAFQETINVFAGVFDSYQMVGQTIPVGERRTLVAVSNTLVAVGASLRRRSN*
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