NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164292_10106151

Scaffold Ga0164292_10106151


Overview

Basic Information
Taxon OID3300013005 Open in IMG/M
Scaffold IDGa0164292_10106151 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2109
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016117Metagenome / Metatranscriptome249N
F024248Metagenome / Metatranscriptome206N
F073067Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0164292_101061512F073067N/AMEPAVRVAPAPTHPGANERLPRVDHLPRSDEAIVPEQLPGVEPLAAGACVNPCLERTGVFGKTLSSFLSY*
Ga0164292_101061513F024248N/AMLYIEIFLPPNSVEYGSFPRVPIGLFCCGRGHQYPPAQVVPTSTSSLSPRPLQSVDPALIARSFALPLIQSMYQISAVRPPLLRQDALRPSSPEVQVVPPNDLDVQADEDDRVISPRPSTSAAAANDSLSLW*
Ga0164292_101061514F016117N/AMDSIHIELSPRLGLLIAAWKNFFTRLHAQSILTDNGLQYLLALLVDKLQEAIDSEFYPLVLDWLRETLPKVLNCRGTVGLINQVPAHLWTSDHIFRHNYFVCLERRANRLSIPS*
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