NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164292_10160296

Scaffold Ga0164292_10160296


Overview

Basic Information
Taxon OID3300013005 Open in IMG/M
Scaffold IDGa0164292_10160296 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1636
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F001531Metagenome / Metatranscriptome676Y

Sequences

Protein IDFamilyRBSSequence
Ga0164292_101602962F001531AGGMNWQQIEPWEYVITSVASEYHRKFDMVELEDIKQSLYEWFAKHPNKVAEWEKIGDKDAKNLIYRSLRNHALDYCQKWKAKSVGYDVSDLYYYEADVVEALLPAVLRGEYGVTHKLNLGRPGRPSAPSEGGNLSVMMMEIDSAYWKLSKEDRKILFFRYAESMDYKEISNYLSLGSDDAARMRGNRAVKRLVNKLGGFKPYYDTDITEPTETESSEDSSYQELGTPQESEQ*
Ga0164292_101602963F001515AGGAGMSNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEASYWAFVLEESTLIVPTDALRYAVKEFGREITCNIPPNLSKGFLITVDDLMSATRLYKKAKADELATN*
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