Scaffold Ga0164292_10172189

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0164292_10172189

Scaffold Ga0164292_10172189

Overview

Basic Information
Taxon OID	3300013005 Open in IMG/M
Scaffold ID	Ga0164292_10172189 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1564
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidimicrobium → unclassified Acidimicrobium → Acidimicrobium sp. BACL27 MAG-120823-bin4	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F097223	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164292_101721891	F097223	GGA	VKVANRVTSLLIVLGFKHKPATKTGRPTISTPFTAAEILECIHELGYTARLRSEEIGEFGECVSITITSEEELDCYLYLGFSGPYFEEFEISTYVYTKENPYLEANRWHANDHLSVVTVDCNTETGNPEYENGMFTLHQRMMWHMDGLDLAEGVGTALAIWDEEYVELLGQIHPDVDVG*

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