Scaffold Ga0164294

Basic Information
Taxon OID	3300013006 Open in IMG/M
Scaffold ID	Ga0164294_10000022 Open in IMG/M
Source Dataset Name	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013006 Open in IMG/M

Scaffold ID

Ga0164294_10000022 Open in IMG/M

Source Dataset Name

Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	205779
Total Scaffold Genes	193 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	60 (31.09%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

205779

Total Scaffold Genes

193 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

60 (31.09%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.008	Long. (^o)	-89.701	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.008

Long. (^o)

-89.701

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009453	Metagenome / Metatranscriptome	317	Y
F010014	Metagenome	309	Y
F016250	Metagenome / Metatranscriptome	248	Y
F018866	Metagenome	232	Y
F029976	Metagenome / Metatranscriptome	186	Y
F037077	Metagenome	168	Y
F046855	Metagenome / Metatranscriptome	150	Y
F069739	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000002211	F018866	N/A	MEARHKTQKKVNNETPGDNGEKDSAFKTLLEDSAREAYSRPWHRIERGLRLNRLRIFVEELVPQHNMTKEEKDALFTFLQKSLDKKLLNTLKIVQYDQEKQRILSIRGLELKRNEDNVLKWGFHTKKKAEGTRKKKKGEEVTAVETKIEAGE*
Ga0164294_1000002213	F010014	AGTAGG	MAQPVYPDRHTISAYQAFPLPRFVVRTRREVDTIDSINARQFEHWQTDGKYETMNRPDMNKQAPFYDMLPNGSRMSERNYRSQPRYDVNEPKGVENPYFNKYDTSFDARNMTRELRASVYEDKNTGYLKESGKLLQRNFNNRWLHSTVVSQQAQAAEQIRPEREDLQHFYVNQPISDPKSL*
Ga0164294_10000022168	F069739	N/A	MLEDTIYQPRVIIMAVFGYTNKVSEKDIQENTLTLLLQEMTRPPDKVLLTSEGNSSIYIQDWAESLGIKTQTFHADWTRNGKMAHIIREDRMYKECTHALVFLSQRSDRLEKLAERMARKGKIVFTSSSNQILTQFEMSNCEHSRPASKPAHKSDKGIVQMWQKYQRKEEC*
Ga0164294_10000022173	F016250	AGG	MSPFNRLILILGILFIVAFIVGVYYSDALRKHNPFMDKHLLQRGLDKPTIWLYYDTSDVNSRQWLDFGARSSRALNMPFLNLCYESIVKHNHKDYRIEVIGGLTGVAELLGGWEHLPPGLRDPISPVKEAELNYIRAAILAKYGGLWLSPYCVCLKGFGELPANKSVFFGTDLDETYAGENGTAVPGLRAIWSPEPNHPMFKEWAAVAYTRVAQKRGGDQIRGDPKWDFVRFSTEYVHTGIVVDPHAEGMRKKNGKRLQLEDLLASGTDGDLPFDVHDYNVYIPFPWPELRDRRIFGWFLRMSESQIMNSDLAITYLLQRSFQS*
Ga0164294_1000002222	F046855	N/A	MSLPAAMAPQAMLSVMAVSPLDTFLQIFNTNPYFIGIMMLILNLGGRFISLEVTKKQEQFLQHPWVRRVLIFTVLFVATRNIWVAFWTTVTVVLLLGYLFNENSSLCIFGAGGVSGSRCADAPGPGEEMTPEEKEILQRLSAKAQRYQASSNTSTKSVKNPQQTALEKSLQSVKTSSNGQPADEEDDVLHTDIYAANLSLLKKD*
Ga0164294_1000002257	F009453	GAG	MASAGTLLSDLDSRSPVFNKDDDLVNKILADMNVPSASNPVMNQQPMQPPSGNGRMIQAPNPNTTYPTAIDPGTATAHMIGKEYPTAADFANLMHTSPMSHGGSQFASVPQYAAPPQPTLIDTTKGNLYSDIVTQVKQPLLVAIIIFLVSLPIINVLVGHYFPSLLRIGGDLTTAGMALKACIGGFLFWFIQKILVPLMVV*
Ga0164294_1000002287	F037077	GGA	MTTIYDASLITQRRKVKAESGSFITRITNPTNPNTGYAPALGIWDQSIINTVRQGNMKYYRKGDGGCTTINNGCPCEPISTTDGCCNSN*
Ga0164294_1000002298	F029976	N/A	METCEELQGNDLGYSKNAKDWAIRRRVSKADKIGYETVSETAKASVTNESLINLRLLKVQSILYGNIEGNTTWGGLAYSN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164294_10000022

Overview

Ecosystem & Geography

Associated Families

Sequences