NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10000653

Scaffold Ga0164294_10000653


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10000653 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32901
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (77.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009529Metagenome / Metatranscriptome316Y
F020909Metagenome221Y
F024097Metagenome / Metatranscriptome207N
F096878Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_1000065319F020909AGGMITKRGKKVRAIAIAFGIIVIWQVASNLWWVGIDAPNAEFFGWCWGSMSECVVL*
Ga0164294_1000065325F096878GGTGGLINRDPLFSVHNALNGDVVIYLEERDANCDLIEDVLTQVPMESLKAINSLRHIDLKSIESARLMDKARSAVPDLAIQLASVSESEALTLAEQLITAVKYARAMRSMPTATKLELVK*
Ga0164294_1000065326F024097GGAGLANPNGRKGALFETSVMKWLREHGVSAERLTKAGSKDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEANNYASARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLETRE*
Ga0164294_1000065340F009529AGGAGMNCNICQRATKKEGACIVCELKVKACLVELPALQHESSEHLAPARTGSGAVSAERSIGINVNALDFSMATDLLHILHGWEVPIRIGRGLTPPAYLDKKPTIEAEVDATCSFHLAHLDYTLFQPWAVEFASDVYGLHAKGRAAAKKFSEQARRIPCPSDECKRFVVIDVENLTDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIVKRHDIEKRGSLYNFGDILKVVQL*
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