NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10002383

Scaffold Ga0164294_10002383


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10002383 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16969
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011148Metagenome / Metatranscriptome294Y
F012668Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0164294_1000238316F011148GGGGGMAVFNKNSLTQVSGFDNPIIAGELVYQQKTYWNLALTNEAGNPVDLTGATINAQIIRRQLSNVKDTRYGLTFDIANYTPTPTPVSLSITNRVDASGSFTLLIDDSSWSLIATDPEFAINDVDGIGFSGRIKIGFPQTGITPPQDNIIFLLFIVRSDAIVKV*
Ga0164294_100023833F012668N/AMGITRYENITVNNVTNGVNAVGEYTTTITSWFETRGLVHDLTNNLRISERYRVYQDLMSITLNYTPNTKEIVDNQNLYSFTWRNKDWRITDCRESNDRMSITFICYYNDPSSPV*
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