NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10028658

Scaffold Ga0164294_10028658


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10028658 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4477
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011390Metagenome291Y
F015209Metagenome256N
F048994Metagenome147N
F072322Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_1002865814F048994N/AMIGTVKIEFGAMNLYVNGVCVATTSTMAGIKHAAKRYNLQGYVIATG*
Ga0164294_100286582F011390AGGAMEIKTTNYGVCKVKKHKYQTNGNLALSLVDETGQPVVYITTNILPMGEDEFCANYFNMGATLWNDIVASGLFEQTGEKVPSGYCEYPVCKLVKEVA*
Ga0164294_100286584F072322GAGGMETVDFVNATEFFDGMELGHMESDEFLSKFTYGDIRTTFTLVSRGTFLSYLKSFITDCEDIYEKDVVMEALRDYNLSVDVRIKYVNIEA*
Ga0164294_100286587F015209AGGCGGLLAEERWHKFESTNCKPSCKGWNGWAPYCECGSNFCTFKPNGELADMVLVIEARPLEF*
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