NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10031135

Scaffold Ga0164294_10031135


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10031135 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4269
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003750Metagenome / Metatranscriptome470Y
F004476Metagenome / Metatranscriptome436Y
F004669Metagenome428N
F007752Metagenome345Y
F033793Metagenome / Metatranscriptome176N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_1003113510F033793GAGMILGQDPNSTRPIGTEKTLKEAKEYILSRAYNNDYCAIYVADNENPAGELVGRWIIKNKKLTSFEKKSKPIDYKKQI
Ga0164294_100311352F003750N/AMNEEIIQRTMQVFLYTGGIVAFWQITKYMPKALYTLLEYITLLSVTALCFTPISMLVEYILGGNIDTTMMFFGGLATVSMLSTMWMVMVQSSRALQGKKQYQYVVL*
Ga0164294_100311353F004476AGAAGMLFSKHGFKSVDTTEEFVKQAIEFGQKDIVLSVVHSNGVIDLVISPTMDAIEADVYHFLNDDTELKYSMPIKTLTDNNISSLALTSAIHAYLSEAFKVAEMFRSTTRQSTDYAK*
Ga0164294_100311354F007752N/AMENTTMQLWEVKGFESSSVKALFIGKTANGQDCIGCAWDANTLYVYAYEGIVDTFMYYMERFNSVGKAMAFTKLKDGMEEGFYFSPYASGRKQQNHNQRYTLRRYETMSNHLVVHQNVCFDTPENAIKNLISSGDLEVERSYFVDCMAKRFA*
Ga0164294_100311359F004669N/AMENTTMKLWEIKNFQSSSVKSLFVGQTANGQDCIACAWNSSELYVFAYQGIVDTFLWALEMFQSVGQAMAYAKLKNGMEDRSYSLPYHVTMEQRTHNQLYMFQLQYLHIFEGTLEIHSNLCDDTPENAIKNLISRGDIEAENSRLIDIFRKREVCA*
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