NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167615_1005634

Scaffold Ga0167615_1005634


Overview

Basic Information
Taxon OID3300013009 Open in IMG/M
Scaffold IDGa0167615_1005634 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_9_15 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2412
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101504Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0167615_10056344F101504N/ALKLNFDKVLTLNTVSQASLKQIATELNNFDGILFVDDIGAINTEYMRVTTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPAVFEEIVNNTSFEANIMDKSYRYYNMRIPSNKPFQHPRIKELQHIKDKFENMKVDIDKQKVEAMANNFMTFNSVIRRYKIVYNFVKLTAILNGHKTATSEDYRFVSKMLLNNIIESELLERKGISSRFKFNTFLFNVMLMAKYYGNMFHYSKLKTYLNVSTKTIYNYAKANNIKIDNGYIIYDNERMLRVLRNVI*
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