NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129327_10143877

Scaffold Ga0129327_10143877


Overview

Basic Information
Taxon OID3300013010 Open in IMG/M
Scaffold IDGa0129327_10143877 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1186
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1043Long. (o)-76.1811Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036970Metagenome / Metatranscriptome169Y
F048232Metagenome148N
F063642Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0129327_101438771F048232GAGMDGRITRWMSKTVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKNKLRQEIARVQKALKELDPDGM
Ga0129327_101438773F036970N/AMRIFCIYPNLFPIFAQIKHNTMTKYKRWVTAVNRAIVAEMAMQKKTQKDLAEALSIHPVTINRKLKDPGLFFVGELGLLCDTLNIDLKNPPNYGTGAN*
Ga0129327_101438774F063642N/AMEHTVSPLFDEVIQLATPDCINRRDMTLVRKLKNLQEYTVRIEKILEDAKSIIKDHAK*
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