NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164295_10105715

Scaffold Ga0164295_10105715


Overview

Basic Information
Taxon OID3300013014 Open in IMG/M
Scaffold IDGa0164295_10105715 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2090
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009142Metagenome322Y
F012433Metagenome / Metatranscriptome280N
F073252Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0164295_101057151F073252N/AQAQIGSEELVPFSGVFKTPASITYVARADTTARTAFDAKFYDILEQLYRDPDLASYLTTNSNITFYVAKVTGDSPAVISQNRTWSRAMTIDITATAKK*
Ga0164295_101057152F009142N/AMSNSVQINVEDALENLLANIPNLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQADFDAEYCSIFEAFYSETPPLFTKIQNNIVDTRVYTARITGQTPTIRTAKRAWQRGLNMSLICTPSETSDGLRSLNFFQTQNSMYVALI*
Ga0164295_101057154F012433GAGGMSADQVADLRERLARIEERQVGLISILERHTSEIAEWTSRMNSKVDTLERDAHTIKTKLWLVALVSGAVFSTIWE
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