Scaffold Ga0170682_1010776

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0170682_1010776

Scaffold Ga0170682_1010776

Overview

Basic Information
Taxon OID	3300013024 Open in IMG/M
Scaffold ID	Ga0170682_1010776 Open in IMG/M
Source Dataset Name	Gypsum crust hypoendolithic microbial communities from the Atacama Desert, Chile - KM37, HE
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Johns Hopkins Bayview Research CORES
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2370
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities

Source Dataset Sampling Location
Location Name	Chile: Atacama Desert
Coordinates	Lat. (^o)	-20.43644	Long. (^o)	-69.58397	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083223	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170682_10107761	F083223	N/A	FHALLFVPPSFGSVKELRHFVASSWYEICGKVSEGHLLAGTHVEEVRRWKRATSYVEKYLAKPEEFPEGVETGRIWGKWNKELLPVRWETVRVTLEDAFKIRRVYRRLARMRGRGHLHRLTVFIRHENVVRLLEFLGYRQEE*

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