Scaffold Ga0170681_1012547

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0170681_1012547

Scaffold Ga0170681_1012547

Overview

Basic Information
Taxon OID	3300013026 Open in IMG/M
Scaffold ID	Ga0170681_1012547 Open in IMG/M
Source Dataset Name	Gypsum rock hypoendolithic microbial communities from the Atacama Desert, Chile - Cordon de Lila
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Johns Hopkins Bayview Research CORES
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1909
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities

Source Dataset Sampling Location
Location Name	Site Cordon de Lila - Atacama Desert, Chile
Coordinates	Lat. (^o)	-23.53976	Long. (^o)	-68.68737	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074002	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170681_10125472	F074002	AGGAGG	MYEELTSGKEVVDLSPSQALDRAEYFLMGQDYVVVQRTATTLTAERKGSEGTTGREGTPKVVVMAVPQPDGGVRIKVSGNDREGMQERQGLWKLWAENLPKRQH*

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