Scaffold Ga0163212_1021488

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163212_1021488

Scaffold Ga0163212_1021488

Overview

Basic Information
Taxon OID	3300013087 Open in IMG/M
Scaffold ID	Ga0163212_1021488 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2330
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Malawi: Central Region
Coordinates	Lat. (^o)	-13.5167	Long. (^o)	34.7703	Alt. (m)		Depth (m)	45
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025724	Metagenome / Metatranscriptome	200	N
F056546	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163212_10214882	F025724	GGAG	MAKSKTTVKNDMVDSKPSKNKEIAKVSSEEKASIAKQKRLAVMEKVLEFISQGLSQTDALSFVGVSYSSWNTWMKNHPELVTDIKRAEISLKVRHLQNIQRHSENDVRASQWLLARKFPSEFGEKATIDMNTKTDDSKVIINVIQQVQKEKHGQVVQVKHELPEETEDEED*
Ga0163212_10214884	F056546	AGGTGG	MKPKDRKSILSLYVSTKLISLLDTISDRHSVKVSKLAEKMLLDGLQRDQIDLALEIDDDDAIERITTKIIRKLDHGNERKD*

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