NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163212_1040665

Scaffold Ga0163212_1040665


Overview

Basic Information
Taxon OID3300013087 Open in IMG/M
Scaffold IDGa0163212_1040665 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1592
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMalawi: Central Region
CoordinatesLat. (o)-13.5167Long. (o)34.7703Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001229Metagenome / Metatranscriptome741Y
F009396Metagenome / Metatranscriptome318Y
F016967Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0163212_10406651F016967N/AMYANQKGPLKDSTVAQVSAYVYYEAAVLSKLTSNAQFKGAFTKVIFDQINTDFGNYVDALARARTKSLHHVYEWKRTGVPTARLFKLNKVSQEGLSFKINYEFLPSRSMVPSSTRKRRHVFVNKAAVIEAGKPLVIRPKNAERLVFEYDGEIV
Ga0163212_10406652F001229N/AMNLDVYRQFEIQDSDTGAIVRNWNFYKTVPCHVKGIISNSATTRSGDKQVFSNRYLNDQIIQVRTADKLTIREKVTNIRDSDGSVIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ*
Ga0163212_10406653F009396N/ADFNHIHDLGFSSDSSDPGYRSYAELIRAERYARKQIEEYTGQHFYLYDDAYVIYGCESDTLPLPAKINSLQKLYVKDILLIDNLASPAVNNWGLTVNLTETKFGLRVDRSSTLDNAVYIANGMVPPTIHDYAGIFKSGVPYKVQGRFGWSSVPENVEQAAAELMKDYFSKDTVWRNKYVKNISTFDWDFEYTGNAYTGTGNSFADNLLADYILTAKAEII*
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