Scaffold Ga0163212_1056573

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163212_1056573

Scaffold Ga0163212_1056573

Overview

Basic Information
Taxon OID	3300013087 Open in IMG/M
Scaffold ID	Ga0163212_1056573 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1307
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Malawi: Central Region
Coordinates	Lat. (^o)	-13.5167	Long. (^o)	34.7703	Alt. (m)		Depth (m)	45
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008494	Metagenome / Metatranscriptome	332	N
F009750	Metagenome	313	Y
F033795	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163212_10565732	F008494	GGAG	MTKQEVINMFMNAVGQYTTAIDKTAESNIQYKRSVYALEDAINLIYRNVDAKELGSNAEARNAKVSEKTQDLIVAKREAEYQLEIARANESRIKAEVDQIKYIIRALEVKEEA*
Ga0163212_10565733	F009750	N/A	MNAILQPSKVMKEIVTAIYQNGKFKDNKILKPYLTDRIGIRMTFPEGAECILWTNGKKYYAVCEAFGTIFTVNIPRNLGDDLWMKFKTEHEGNYSYQSF*
Ga0163212_10565734	F033795	N/A	MWSMAVNKKDTVWLFEAEKFVKRYLSINPNGYRAYEYVGQFYRIMYPDLKLSVRFYESAIRWKDAPKSTHHSLISVCEKSGDKIRAIGYCKMTLARFPNDPYTKSKLEALTKL*

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