NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164296_1005707

Scaffold Ga0164296_1005707


Overview

Basic Information
Taxon OID3300013093 Open in IMG/M
Scaffold IDGa0164296_1005707 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10817
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012214Metagenome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0164296_100570712F012214AGGAMSEYTRIRTPFAQMSFTPDVPSNALGANEYNSGKNVEADVRGIKKVAGEQAILSAIPGNVFYMDGGFRSQSTWVYIAATTQGKWYMITSAGISNITPGVGANPNAALSGYTDDTNITSDWVGGVFFINDTLRPPMYFRPTDTEINIYDSAPDNYVWNYESGLSPAVTAVTAGFVRNYCSPNVGNILVAGNLTKTISGVNYQYPTTIRWSQAFANTGVPTTWSPTLNNVANELEIPVRGPIIDGFFLGANFYICSYWDTVVMTPIGYQNSTAPIFGIRLFNQGRGLMNNNCWVNADQTVYGVDARDIWVFDGSSFQGLGNQKVRDYFFSNISPTYQNRMYMVNNTKKYQIEIYYPDLTSTGWCNKMLSYRYDLQIWNAPKDVQNSCMGAEGPIYQSGAFNLASRTIVYAQGDTNNSQLIQTGIGNSFTGNAIHATFERTNIQLQTSDGPVPFLSKSYLHRMAPEVSGTGYLTVTVGGASSVAATTLYGDSQQMQIVTESPWVPTNQNKNTLPALKVESNDATDTWNMTAMNWQAKIVEDSF
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