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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013093 Open in IMG/M |
| Scaffold ID | Ga0164296_1014390 Open in IMG/M |
| Source Dataset Name | Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5510 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F053029 | Metagenome | 141 | Y |
| F071904 | Metagenome | 121 | Y |
| F086508 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0164296_10143903 | F086508 | GAGG | MSFTDLKITELRKAADSFGIDTSEFKTKPEIIAALEEEGISWQMYAKFDNAEKQDIEVPEIEKKKRESKIMGKTANQVLVKMERMNHSYQVGVYTFSQEHPFIAMSETEAQKIFDTEDGFRLATPREAQEYYA* |
| Ga0164296_10143904 | F053029 | AGGGGG | LQTINTNSQEKIYLEVYNNGSLSQADSLPTLSIYNADSDIYNPGGVLSRTPLYTNLNAYDEPATGVYSYQLTPNITSSNMVLEVVWTYVQNGVTVNTTDYYAIETPYASIPETMDFLGYSGTVGAANYLDPNTIIKTEKMARTIIEGYTGIKFYKYYGGQEIYGIGANTIQLTEKVLSLDQIYENEILVYDQTQTPVYDTFGYNTEISPSGYQIRIWFPGWQDGWNNEMDPEIYEYGRFRDNYLYRFVGQIGYNYVPEDIKLASMLLQQDIMSNDYNWRNKYLSQVNLSEISFKMAGGAFNGTGNVMVDNILDQYRKANIVII* |
| Ga0164296_10143907 | F071904 | GGAG | MTVDYSRVAATDIRNVLWAQLQSYGILKASDYTPNGTNGLNTPLNPIIPSQQVPEFNNLLPGKAYITYDIVQRNYGTQWWMSSESMVMQIISRNNAQILTITNFLTDFVRRYDLSAEDINAYAETVNSPFKFLYCRLESANPVQPFQDEGGFMSGDFSFMYVYTRSVDEGPNYTGRYI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |