NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0164296_1045196

Scaffold Ga0164296_1045196


Overview

Basic Information
Taxon OID3300013093 Open in IMG/M
Scaffold IDGa0164296_1045196 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2188
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007405Metagenome351Y
F021463Metagenome218Y
F027746Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0164296_10451962F021463N/ALPKENIKVSDLLENRVVRLEVRTDNHEEDIKELRSSNSDLKKTMTAIEKNLAQIKYIAIGALAVVLAQSIGLDKVIKLILGA*
Ga0164296_10451963F007405N/AMIKAISPHHSFSYESAQLNVYHADKGQGLPKHSHTFSHATVCHSGSCLVSLEGRSYTIDKNSQPLNLPANEWHEIEALEDNTVFVNVFAEGKY*
Ga0164296_10451964F027746N/AMEYGIYPNSTPEFCTLQKSDGTLEMQVRYINKPMGYIGKWMPVKIEKENDKSNQSTS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.