NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164297_10032295

Scaffold Ga0164297_10032295


Overview

Basic Information
Taxon OID3300013094 Open in IMG/M
Scaffold IDGa0164297_10032295 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2890
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015856Metagenome / Metatranscriptome251Y
F022657Metagenome / Metatranscriptome213Y
F030377Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0164297_100322951F030377N/ANMCPKPLPGNFYGMSIAESVVPMQEYNTSAARAEIQLGLLTATPRIGVKPDRLDFEMLQDGEAAIFILDSKFDPTKDIYRLPPPSGNLQFLEVAMDRIQQDTMAMVGMTTPQDVFNPEVMAPGNSGIKLQLALSPNQIIQDNTVRNAAEGLKEALWLIWRTLIQYGDDYGVKKLAQASHPDKTPVFLDYQAWDDMNFCDRKQLHLELALGMMSEENALSRLQIIQKCQTDLYTTTQAMVQQGTLTPEMYKKIKKPFADTLYVLGVKDCDVYLPNDQEVMAMIKQGQQAAAQKQPTPVEQRDLSTAKLNDTRAQQISAQINGQDARSQLDYMSVAQNHPKVYS*
Ga0164297_100322952F015856AGGMINEDSIEFYNSRLTVDLNNIKTMTPGQQDRVRHYGSQAENLLKNKDLAMFVHHFKFQLADELIEVSGHTNDDNQLRIALSNELKGIDHFVSSLKRAVYMKNRLGNTDKVPE*
Ga0164297_100322954F022657AGGAGMAEITTSQIGNGTTAYGSDIVVKDLDLDVSNRVKDDTPVLNMAMSKKRKVNSTLPLWTDDIYRLPAVQAQVEGAAVATSQAESNSRYNLGN
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