NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164318_10127222

Scaffold Ga0164318_10127222


Overview

Basic Information
Taxon OID3300013103 Open in IMG/M
Scaffold IDGa0164318_10127222 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2339
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0183Long. (o)-111.3802Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036512Metagenome169N
F040420Metagenome161Y
F102256Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0164318_101272222F102256N/AMSSSKIRVYSCKNCYLEFYYKNHITHCPFCGNKVEYVGSIKENEIEGPIYTLKYSTGEKMQRKIEEEEAIKEAEESWYLWEE*
Ga0164318_101272223F036512GGAMGGIIKMYWKVPNYLKRYIKIQDVLKNIFKPCDCGEELEKCIKDKEYFARRAETLSRALAKSINLPEPPDPSKEMEEVNPWKFIAKYGKYDILIADKYYYTLPLNTWIKILSPIQTQVEKILPKWRVDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG*
Ga0164318_101272226F040420GGTGGMKNIIKFIVIGLILTISLTQFLALDTTNTHTYIDGTYVCRDFSRDLILSASKHHIYLDYIYVPEKNHMMVGLYNPLEQSIVIIEPQTDEIIGYMKEDNKKYIRIPVWDEKYYYLNLRV*
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