NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157370_10594357

Scaffold Ga0157370_10594357


Overview

Basic Information
Taxon OID3300013104 Open in IMG/M
Scaffold IDGa0157370_10594357 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1013
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008441Metagenome / Metatranscriptome333Y
F045282Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0157370_105943571F045282GGAVTGIHADIDALKGLHDALARYRHAQRDVTARGEDQLTATRASLEAKASRLRAQLELGQAEYTACQDRAAQADPDDPVDCSGYARAVQQDSERL
Ga0157370_105943573F008441N/AAATELRIRLGGAVWEEHREHLRTISNNMPPAAIELAINALRAILREVPEEFPDRNREVNCFLPPLASAVYAIMQKQGAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFDGICRRPGGPTT*
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