Scaffold Ga0171646_1062457

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0171646_1062457

Scaffold Ga0171646_1062457

Overview

Basic Information
Taxon OID	3300013116 Open in IMG/M
Scaffold ID	Ga0171646_1062457 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 103m, 2.7-0.2um, replicate b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1617
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	103
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078260	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0171646_10624572	F078260	N/A	MGKSIFAEAKPLPDFNAGSMNWGTQRYKFTLIKNEEKTELGSVTLRNKLSGDQVLLSDEYLLSIGGKPMSLKMTQVCRKDQFLSPLKVQCEGKGNDEMPTFKATIQDGEAKIERKLPFKISNSMKIPEGTVTSAAFMRIVTQLPRVEGATYRYAFALEASEMNLKKDYIAKVVGKETIFCDGEAVKCWKISQNGGGIREQLFWVTEDGILQRVLQDGRKQIDLQTGEPGD*

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