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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013127 Open in IMG/M |
| Scaffold ID | Ga0172365_10020266 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4731 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rwanda: Western Province, Lake Kivu | |||||||
| Coordinates | Lat. (o) | -2.05 | Long. (o) | 29.2062 | Alt. (m) | Depth (m) | 388 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019824 | Metagenome / Metatranscriptome | 227 | Y |
| F079812 | Metagenome / Metatranscriptome | 115 | N |
| F091907 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172365_100202662 | F019824 | N/A | MDKYINNNFFGSIDDLLNHCSRLDTDKVEEQVKAEERDECIRVIMKELDCNEFEAGVIYNEIALAETKETVDKMVSDGLLYVSGTTEDGEPLFSLTELGKTLRDEMDKDK* |
| Ga0172365_100202665 | F091907 | N/A | MNKNKTGRKATAVNEITDRNFTIVDLGNINTNVKTATLRMHVKRSVASGRYSVTGNQKTGKRGKPSIVYTYNSATVPTATANSETASA* |
| Ga0172365_100202666 | F079812 | GAG | MDGKNRKIGHVNDTGGVIYAHGPNGENVGYYQKSTDTTFDRSGKRYGFGDLTNALIFETAKRF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |