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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300013130 Open in IMG/M |
| Scaffold ID | Ga0172363_10056843 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2835 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rwanda: Western Province, Lake Kivu | |||||||
| Coordinates | Lat. (o) | -2.05 | Long. (o) | 29.2062 | Alt. (m) | Depth (m) | 388 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011761 | Metagenome / Metatranscriptome | 287 | Y |
| F057213 | Metagenome / Metatranscriptome | 136 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172363_100568433 | F057213 | GAG | MIDNNLDGNATAPEATQDNVANDKQVNAGAIRKSTTSGILNALSQASGQNFESVEAAIGYIARTASQNNNVGNAQPVEVEPTLDSRMGRDVGNDGTDLRDQFIKLQRDLAQKERALRMKELDSEILRNMGDRFDPDLQDYALQKIKNNLTFKRDGSYSIVNSKGQERYGMDGNPLNLKSLVEEIATGNPKLLKQNNLASGSGLRPGQQSFAGATPDAIPDYSKDPAAFNAWAQKMGLGKRIGLKGASVTATVSGASRKIV* |
| Ga0172363_100568434 | F011761 | AGGAG | MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVEFTQVVAPNQGNEYLVPNFAPITYADYDPAGSGGTTGFGNANEQNPALGQGSITATPAVAATAFDVFYAWTTSFELAATLGAELGESYGEKIDQRVCKAFLSFKVTPGNLNYTNTPADGFARPLQLGAMELVADGATPAGATDGFTSNTVLGLVRLVKQNYKVARLPGTPIIVLDSNGDAATVTASVREGSSLNRMLAELTGGAVSTSGGSNLSALGNELLSTGRIESVYGCAVIFTTFLPSATRNVAGVTGESVLVGGYFHETAIFTVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGVADLRRGGAINIVQA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |