NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172363_10239778

Scaffold Ga0172363_10239778


Overview

Basic Information
Taxon OID3300013130 Open in IMG/M
Scaffold IDGa0172363_10239778 Open in IMG/M
Source Dataset NameSediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)1215
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameRwanda: Western Province, Lake Kivu
CoordinatesLat. (o)-2.05Long. (o)29.2062Alt. (m)Depth (m)388
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010746Metagenome / Metatranscriptome299Y
F016115Metagenome / Metatranscriptome249Y
F035200Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0172363_102397781F016115N/AAIYKKQLDDPEAYNHHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGYTCNTIEDANNRFNQLTEKLKNYNATAILPSGEKRGRGRPRKIA*
Ga0172363_102397782F010746AGTAGMTYHCAVSGEAIPPERVEALIVLGVPESQWTKKEYSQVKKLRAVYAGDDGSNDIVICDKVDGGNLFDNEVVAEIENDI*
Ga0172363_102397783F035200GGAGMTSKFIVLRDGIRVSNDMHDRAEDAEHEANFWREIIKRWPDGTKVTIKKIGG*
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