Scaffold Ga0172373

Overview

Basic Information
Taxon OID	3300013131 Open in IMG/M
Scaffold ID	Ga0172373_10000230 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	89212
Total Scaffold Genes	112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (58.93%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Democratic Republic of the Congo: South-Kivu
Coordinates	Lat. (^o)	-1.64	Long. (^o)	29.05	Alt. (m)	Depth (m)	10
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F009680	Metagenome / Metatranscriptome	314	Y
F012658	Metagenome / Metatranscriptome	278	Y
F053106	Metagenome / Metatranscriptome	141	Y

Family

Category

Number of Sequences

3D Structure?

F000325