NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172373_10006969

Scaffold Ga0172373_10006969


Overview

Basic Information
Taxon OID3300013131 Open in IMG/M
Scaffold IDGa0172373_10006969 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)14852
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (65.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameDemocratic Republic of the Congo: South-Kivu
CoordinatesLat. (o)-1.64Long. (o)29.05Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006261Metagenome / Metatranscriptome377Y
F011482Metagenome / Metatranscriptome290Y
F020531Metagenome223Y
F027488Metagenome194N
F057363Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0172373_1000696911F020531N/AMSLSDIAVLVGFIGIYDLRIQVDELKVRAWAESFDSDLPLQEAKRIVSWHYANFDTAIQPSHINKEWRRRMSDEREREKSRLLSLEFEEREKQKASPEVIAKWKKEFRGYMDRNRVTDAPLETDSGTVAPDP*
Ga0172373_1000696912F027488GGAGGVSIRWITKVWADSPYDGTKLLIHLALADISHDDGRFFASQSNLASKGRCSVEYVRKVINEMITDGHLQIITKGNSRGNATVYQLLWKKLPNSVGEEQSLGEIELPNLDTPNSPTLEVQLPNSTPYHPSYTSVLSTTKSDETAIAIIALSEAVARKWWEKQRVKPLGKSAWHSLLAICQAAEKRGYTAEQIEQALDYIGTVPSMRQMDLVLRGVGVKTKHEQSAIRAIELSEKLRNESI*
Ga0172373_1000696916F011482GGGGGMSEEVKPSLGEIMRRLDDLTMEVKQMNLNVSQTYLRKDVYESDTERISQAMEHITDRLAKMESRSEWVVRTVGGLMIATIVGASVYVGQIIGF*
Ga0172373_1000696918F057363AGGAGGMDSKTKAMLASYGRSFLAAVTTAFMITGGDILALDGDSVKAILAAGVSAVLPVAIRAANPRDAGFGKIADGVTEAVVKKMTAKKSAKKK*
Ga0172373_1000696921F006261AGGMATISSAYTTSEPILIDNPAFWSFTAPESPTIKITNLIVEQPLNQNIVESYGVFKPLGASKSVVISQSIYGVDGTYQITVQGENDWDTLYPVLTYQGTLHVHDPLGRQKYVRFVDRSWTESGNIDNLIRVVKVTYFEVDAP*
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