NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0172372_10036855

Scaffold Ga0172372_10036855


Overview

Basic Information
Taxon OID3300013132 Open in IMG/M
Scaffold IDGa0172372_10036855 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)5046
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameDemocratic Republic of the Congo: South-Kivu
CoordinatesLat. (o)-1.64Long. (o)29.05Alt. (m)Depth (m)9
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F003543Metagenome / Metatranscriptome480Y
F005054Metagenome / Metatranscriptome413Y
F005479Metagenome / Metatranscriptome399Y
F006841Metagenome / Metatranscriptome363Y

Sequences

Protein IDFamilyRBSSequence
Ga0172372_100368552F005054N/AMAEVLINSQSPITHNVFWNGDIVEADALPTVKLFDVTNDPSISPAISPTQILDTLSSVADENNPGSYTVYVPYSYTNRNRTLRLKWEYQINGTGVARYDDVFVVTPYIDFNHVAELGFSTDSSDPNYRSYKDLLKAERYARKQIEEFTGQKFYLYDDLQLVYGHGSDTLPLTAKIYSLQKLHANGILLIDNLNQINNWNYPVEISESGYGIKINRADLLDNTVYTANGMVPPSIHDSPGVFQDKVAYKVQGKFGWEKVPDNVELAGIELMKDYFSKDIMWRNKYVKTISTFDWDFEYTGNAYTGTGNAYADSLLADYVLTTKVEII*
Ga0172372_100368553F001229N/AMNLDVYRQSEIQDSDTGAIVREWNYYKTIPCHAKGVISNSATTRSSDKQIFSNKYLNDQVVQVRTAERLTIREKVTNIRDAEGNTIWTEINFPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ*
Ga0172372_100368554F001900GGAMLVQAASGLERMMYANQNGPLKDSTVAQVSAFVYYEAAVISKLTTNDRFKAAFTKIIFDQINIDFGNYIDALARSKPKSLHHVYEWKRTGNKSARLFKLNKISEDGLSFRINYELLPSRSMVPNSTGKRRHVFVNKAAVMEEGRPLTIRPKNTERLVFEIDGETIFMPKGKPVTVRRPGGSAARNQFTLAHSRFFSGRLVNESIKRSGFQKIFNSSMTKALRVPSNIKKVQYSFSPNAIRSQADAALTASFGGAM*
Ga0172372_100368555F000258GGAGGVTANYKLDAMLELRKYLWKELYTRDIFDENEYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWMICCEQILFTIYSTSIADINEIRNYMTDEFRRMDESARDINKWSGLSNKFKFHSVYVADISPTAPSEELQGFFSAEVILEIKYSRITDGQGRFL*
Ga0172372_100368557F006841AGGAGGLATTVYNVEEVQLQNGQTVKLKPLSIKELRKFMIAIKKTADSKTEDDTLNILIDACAIALEKQLPELVANREAFEDAIDVPTMNRILEVCGGIKLDDPNLVAAAVLAGQN*
Ga0172372_100368558F005479N/AMPELINTLQALKKKDYEDKKFFASLKGVDIGEYQDDKKRGSSFEDIELRAAGINAVSNDVVSLQGRFAAQAGFGIGEGLGYTKE*
Ga0172372_100368559F003543AGGAGMADETISTRIVANADFSALIADVHKVTASLSKLQEQLANSNKMMANQIAVMNRSFADTLRSTGQFSTHFVSLQSDVEKFGKNLDGGKLKLNQYFNTFRDHARTSGGLIRDLAKQQVALQNSVLQPLGRNAQGLMQFNVHVPRGLDEIKNKTAIARQELAIMNKVIQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.