NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116815_1009163

Scaffold Ga0116815_1009163


Overview

Basic Information
Taxon OID3300013195 Open in IMG/M
Scaffold IDGa0116815_1009163 Open in IMG/M
Source Dataset NameMarine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station7_GOM_Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1180
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location NameUSA: Gulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008221Metagenome / Metatranscriptome337Y
F017490Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0116815_10091631F008221N/AMAITSTKLVDDNFKIIVNANGVGSEEDQKIVDVEASNNASSEPKISIANLQYEIIGTGEVTLFFEKRASVDTTKQLIISGRGNYGLKPDEGKITDTIGNLLLTSDSNVTKYN
Ga0116815_10091632F017490AGGAGMAYQGSMKIKGSSTGAGGAISASNFGRAHFVRIQTQAATNTVTLKNAGGSTLGTLILIAANDSIIIEKEETDTLQTSGNAVGSAISSPR*

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