NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172421_107162

Scaffold Ga0172421_107162


Overview

Basic Information
Taxon OID3300013212 Open in IMG/M
Scaffold IDGa0172421_107162 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Saiful Muluk Lake, Pakistan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBGI Tech Solutions Co., Ltd.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8106
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (14.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location
Location NameSaiful Muluk Lake, Naran, Pakistan
CoordinatesLat. (o)34.8762Long. (o)73.6934Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011226Metagenome / Metatranscriptome293Y
F011227Metagenome / Metatranscriptome293Y
F034850Metagenome173Y
F043829Metagenome155Y
F047481Metagenome / Metatranscriptome149Y
F093533Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0172421_10716210F043829N/AMKQLPKWMDLTTQERHKLLGELIDAMIYLGHAVEHLQVSVEKFREHGYVRSIIMPDEDLTNYTNDNQNQNND*
Ga0172421_10716211F034850AGGMEDDLVLGEAEEVEEVEEEVGYTFPEYISSSVEVLTMLETANPMTREEIEKMQELKRLCLEMLEYSVKSMHEMLFNTDIAD*
Ga0172421_10716216F047481GAGMDSKSIGMCVATILIKLWADLALSQVGVVVAILAGISTIVYNVYRMIKELKS*
Ga0172421_10716217F011227N/AMNLTELKAAAYDILANLEHLQKQLQEVNQKINEELQKEKNENG*
Ga0172421_10716218F011226N/AMAKQISPVNVWVNGESKSAQYLQVTGINDNYENSATNYWQMFTMNVDAEGVETQGEQVAQGNLTISGEEYVEWGDVPAMSVNAWIYNWVANKLNLVILP*
Ga0172421_1071627F093533GAGGMYYNRIEMTLMVKGEVRATAHPLRNHESIERQRRQWYYFYGLKSILEWEIYFTQKSMMQNSTPFRIEKPFPYLFKSQQNEPTEQSEPKPTSLYCEPINLAGGFIQVVGRGQSQVL*
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