Scaffold Ga0116814_1001382

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116814_1001382

Scaffold Ga0116814_1001382

Overview

Basic Information
Taxon OID	3300013230 Open in IMG/M
Scaffold ID	Ga0116814_1001382 Open in IMG/M
Source Dataset Name	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station5_GOM_Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2294
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location Name	USA: Gulf of Mexico
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023879	Metagenome / Metatranscriptome	208	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116814_10013824	F023879	N/A	AQVHEMIYMKMTNGEYIYGTNLDIGKYSVKNKCECEREFDHVPPCKLEGQGGYSDGSKAFKYVGTDHDPMTHSHPPSKEQLHTDAWGKKVFKKTNGWDYETGEFIYNEKW*

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