NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116813_1076039

Scaffold Ga0116813_1076039


Overview

Basic Information
Taxon OID3300013253 Open in IMG/M
Scaffold IDGa0116813_1076039 Open in IMG/M
Source Dataset NameMarine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station4_GOM_Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)586
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location NameUSA: Gulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028830Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0116813_10760391F028830N/ATGFINRVKLIDSFVYMKIQNGQIHSAVYLPQRDAVKSHSIACNEIFQISEWPDTDLEMKVAFFEGAKVIDAIKHFEADAIKGEIEFIEQEGELIASSLRMFNDELEITLSCSEPSLGFKDLTEDQQAAIFATDNTQFSFNIDTHTISKVKNLFGLDKDETFSVQANGKGVSVNGKSFNAVINPESNGQGEVTVYK
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