NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136641_1000733

Scaffold Ga0136641_1000733


Overview

Basic Information
Taxon OID3300013286 Open in IMG/M
Scaffold IDGa0136641_1000733 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13900
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (72.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location NameUSA: Elizabeth Lake, Yosemite National Park, California, USA
CoordinatesLat. (o)37.8453Long. (o)-119.3697Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015062Metagenome257Y
F016247Metagenome248Y
F037052Metagenome168Y
F048757Metagenome147N
F064337Metagenome128N
F079520Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0136641_100073320F015062N/AMKLTKKIKHKINAVAPRLSDEDIDPIEQDDTDNISSHIIEGWLPWDPEDIEDIKRLISERMPPKQQFVIESFLDGLTYVDIGVTEKYWRYHFAKGVEFIKKELKL*
Ga0136641_100073321F016247AGGAMSHFIVEHRYKGNYVMETITGVEDIDLERYENIIGIWVCETMQECHAMEKELQEMRHARSS*
Ga0136641_100073326F048757N/AMNLKQLLKRAGVSSNIIAEVERKAKMTTAQQEIEHQEKAAAMAKMMLNDVMPHLHSAMTKTPPSKPKKTIIIPD*
Ga0136641_10007333F064337AGGAMSLTEMREDLCTQKRVSRSRVTYDINYDQEVIYVQEGWSDGQNTVWDNEIGIVLIDALNKHGKAQEK*
Ga0136641_100073331F037052AGGTGGVAAKKLIAKFDPKMCDVIIEMGKEGASQKMMWSQLGISKSTAENWKKKHPEFGEALDIALVHAQSFWETQLLANVENKNFNSRLVEIALRGQFQQDYRETRDTKIDLKAEIKVDYQKEIAELLAALK*
Ga0136641_10007337F079520AGGMKLTTEEIHNIYLHQSGVSEGSLRAGADSDFPVMFAEALIEFYEARKAQEK*
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