NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136641_1000985

Scaffold Ga0136641_1000985


Overview

Basic Information
Taxon OID3300013286 Open in IMG/M
Scaffold IDGa0136641_1000985 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11953
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location NameUSA: Elizabeth Lake, Yosemite National Park, California, USA
CoordinatesLat. (o)37.8453Long. (o)-119.3697Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001937Metagenome / Metatranscriptome614Y
F015431Metagenome254Y
F075840Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0136641_100098516F001937AGGMSPDVATIVYSYFFVGVALLAGVSMAARHAIVKHTEELKDKLNRIEYALYNDGKTGLINKVEELLENQQCIKIDVEILKTKAE*
Ga0136641_100098518F075840N/AMWSKWFVSNAITAVVIIGKSPLDFNSTDWKHALNTVWLSVVPVLVAWANPKHDLTMTVTK
Ga0136641_10009855F015431AGAAGGMAVGRKQVRSTLATFIAPPAIDGINQVFTSFPKRIDFQVNSLPSQVNRCVAVIFIESETESRIAVGGAHSGWKRIDYRVVIQLFHHSLERLAEDAMNNLDGIIDDLKAKLRSDHRFGDDSGTLVWQGAEPVIDVSYGEPLSQKGNSIETWSSMAFTVTQMIQA*
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