NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136641_1033131

Scaffold Ga0136641_1033131


Overview

Basic Information
Taxon OID3300013286 Open in IMG/M
Scaffold IDGa0136641_1033131 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Elizabeth Lake, Yosemite National Park, California, USA - 13020-23Y
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1549
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location NameUSA: Elizabeth Lake, Yosemite National Park, California, USA
CoordinatesLat. (o)37.8453Long. (o)-119.3697Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072992Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0136641_10331311F072992N/AHRVLRYLGSKLMSRATVRAQVASYLTDAGITNLSGVKPFPAKFTPEMEFYAGEDPGHSSGAIIFMFIESENENRVALGGAHSGRKAVEYSLVLDCFMRSSHRKSEDAGADNEAFLDSLLAAIRADRNAGNASIIFQWGEGVNPGGADLSVVSYYPRLLNGAGSATQTYSTVRVSVVEILNT*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.