NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170791_10408199

Scaffold Ga0170791_10408199


Overview

Basic Information
Taxon OID3300013295 Open in IMG/M
Scaffold IDGa0170791_10408199 Open in IMG/M
Source Dataset Namenorthern Canada Lakes metatranscriptome co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3506
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001145Metagenome / Metatranscriptome765Y
F001219Metagenome / Metatranscriptome744Y

Sequences

Protein IDFamilyRBSSequence
Ga0170791_104081993F001145N/AMNWNLFSFFLNSEGSFFEFNTNILETNIINIFLLFGLLLYANKVSFSVTLEERQKEIIQTIENAQKDVVSASNYYSLAEKGFTQSLFWLQSWKALYEKEKVDIVNSKYNTVKTGLLETFSTTENLIKNFENKSFVALQRYILFITASKILRKFFFLSEKEQSKLIELTISKLGGNK*
Ga0170791_104081994F001219N/AMNFSTTFFINASGLFDFDLTFPSEALLFLILSVIITNVFLSPITNQLDERAEFISYTLRKSTILLTFGYEKLTTCVGLLTEEIDEMNRQVKLVRNYTNSKFEEEIGVIQKENLTILSQLKGDLAIKSAYLFSNVTNDLTALTDKFFKKKFQSV*
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