NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0175859_1078863

Scaffold Ga0175859_1078863


Overview

Basic Information
Taxon OID3300013314 Open in IMG/M
Scaffold IDGa0175859_1078863 Open in IMG/M
Source Dataset NameMoss microbial communities from three moss species from boreal forest in Fairbanks, Alaska, USA Reanalysis
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1378
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Moss Associated → Moss Microbial Communities From Three Moss Species From Boreal Forest In Fairbanks, Ak, Usa

Source Dataset Sampling Location
Location NameUSA: Fairbanks, AK
CoordinatesLat. (o)64.8591667Long. (o)-147.8247222Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009468Metagenome / Metatranscriptome317Y

Sequences

Protein IDFamilyRBSSequence
Ga0175859_10788631F009468N/AMFGFNRTLKDPLADRKSTERWLAGFPGNDPLAMHAEILTELGHICERNARRTPAALEAVFFLDSHTDALRAALTTQYIEHAARSSRIENQLWSALFDLTQAFLLAYQAFAREISDHVQSNKWQALLPELIGRQVVHLALDGRIRLYRYEQWIPAKWAELHTLFTAACSRQVERQPLPLTIGEDSTTIEQEFLKALLMQLM
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Institute for Fundamental Biomedical Research
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