NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0177922_10082563

Scaffold Ga0177922_10082563


Overview

Basic Information
Taxon OID3300013372 Open in IMG/M
Scaffold IDGa0177922_10082563 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1739
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.844722Long. (o)-79.573889Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F004132Metagenome / Metatranscriptome451Y

Sequences

Protein IDFamilyRBSSequence
Ga0177922_100825632F000684AGGAMTLGGYTYQLGDLFTTSKTGVTGRIVKFSPINSKTTRVSLQLANGARRLAMVSTTK*
Ga0177922_100825633F004132AGGAMSDVMTQEQLSVPYNPNLLVTYKYIPETYAAPESPTFMTDKVTQIEWDLHQGRTYAAVAAEARSNHSWLEDQIVEWYDPNYSKEEVLKALAKHFGLNPVKQVEVQGTVSFSGTINIPLDEIEDFDVSNVTVDVELSSYDYDVDLNVDDVSIEDHY*
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