Scaffold Ga0177922_10096534

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0177922_10096534

Scaffold Ga0177922_10096534

Overview

Basic Information
Taxon OID	3300013372 Open in IMG/M
Scaffold ID	Ga0177922_10096534 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	899
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.844722	Long. (^o)	-79.573889	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001725	Metagenome / Metatranscriptome	645	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_100965342	F001725	N/A	MAAISNGTTCIYGIANGTFGNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSELSVEGIAKTSSIPVLGAVLTFTLNTLSAYPSGSASASFSGTITKIDDKGQNKGFTTVSITAIDYEGITPA*
Ga0177922_100965343	F001055	N/A	GLTTVTFLTGDNNAIQTLPKAVVLCDSAKAPNDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLVSIKAAFTATGDASCYDVTMQSEDEGIDERSWATSFTFDLLAVFPA*

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