NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0177922_10237479

Scaffold Ga0177922_10237479


Overview

Basic Information
Taxon OID3300013372 Open in IMG/M
Scaffold IDGa0177922_10237479 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1281
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.844722Long. (o)-79.573889Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036677Metagenome169N
F048160Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0177922_102374792F036677AGGMPAAIVVEGQFEKGYDQLRLGFLKGSNPSAFKRLMTFATLNAARTLQKPMRDKAPRGATGNLRKKVLARKARFNNPAAVVGIKGGRKGVFYGWLVVGGTGNRRTTPNGTFAVKGVAPRPFVEQVVKQRSNIDRAVESYSKTVAAFFNDEPFRNTILRFRRGNQR*
Ga0177922_102374793F048160AGGMALGQSIAPPPEIIFHLLGAKFGMWPEQVASLPIDEVLLHWMIHAEMQPKGK*
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Institute for Fundamental Biomedical Research
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