NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0177922_10311377

Scaffold Ga0177922_10311377


Overview

Basic Information
Taxon OID3300013372 Open in IMG/M
Scaffold IDGa0177922_10311377 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6341
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.844722Long. (o)-79.573889Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y

Sequences

Protein IDFamilyRBSSequence
Ga0177922_103113771F001298N/AANSGAITFQCLISDPAVMTVLEAGGYMERTQYSVRMPAVTASWTLPDGSNGSSAALLSAGVPIASLGQGKKIVAGGKTVRITTQTHKPGSAWITLVVIDDNQ*
Ga0177922_103113773F001055N/AMGTRSIRHIVEATVATYLSTQTGLTTVSFLTGDNAATQTLPKAVVLCEAARAPSDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLVSIQAAFTATGDATCYDVTMQSEDEGIDERSWATSFTFDLLAVFPA*
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