Basic Information | |
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Taxon OID | 3300013372 Open in IMG/M |
Scaffold ID | Ga0177922_10532616 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 903 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Ontario, Canada | |||||||
Coordinates | Lat. (o) | 42.844722 | Long. (o) | -79.573889 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005737 | Metagenome | 391 | Y |
F017294 | Metagenome / Metatranscriptome | 241 | Y |
F086584 | Metagenome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0177922_105326162 | F086584 | GGAGG | MLHDGEEGEFCEFIDSIGEVRVCWTWCEGDDWDADGYFDVFVFEGKNDITYDIPKAELNWLEKQVPIYAGYEPPSRQRVARAINGYLNKTF* |
Ga0177922_105326163 | F005737 | AGGA | MFDIEHYKKPTNWANVALWIVSVAALVVVALDVLYWRA* |
Ga0177922_105326164 | F017294 | AGGAG | MRVTHLHKSGSGIASKTACGRNILRTPFATDWAGFKQEPTEYRCIKCTSSKQFEVNAKMDAKKAN* |
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