NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0177922_10732368

Scaffold Ga0177922_10732368


Overview

Basic Information
Taxon OID3300013372 Open in IMG/M
Scaffold IDGa0177922_10732368 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2455
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.844722Long. (o)-79.573889Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031848Metagenome / Metatranscriptome181N
F081032Metagenome / Metatranscriptome114N
F086647Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0177922_107323682F031848AGCAGGMSDLFPETGGNLSPRLKWQEEKRIKTLRRADGKWVAFKSETSHSYTDEVELDAVIGLAKKLKMKLWNQ*
Ga0177922_107323683F086647GGAMLGTQTKMEIEILTPVDAHKSGYLSLTTPYNQENPQDVEWMRTVINDLKGCQIVLVEVVGGLEVARHKSEMILAGQRV*
Ga0177922_107323687F081032N/AKTRTRAIGSDLEMTLALLGALRNPKQSKLSKLGKIATTLTKLFK*
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Institute for Fundamental Biomedical Research
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