NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0177922_10983319

Scaffold Ga0177922_10983319


Overview

Basic Information
Taxon OID3300013372 Open in IMG/M
Scaffold IDGa0177922_10983319 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7460
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.844722Long. (o)-79.573889Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001915Metagenome / Metatranscriptome617Y
F012670Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0177922_109833191F001915N/AQCMEWTLAHPLHDVDDIVELADGVFGMEADGILTRDRNVFRKNVTITATVQLFDKGKEFLAVCRPVDKSVDNLLAYCWFDRGGYTTYANEEISNAKFHHVDLSLPVRQRVKLIHEMIDQHILWAHSWGIPVICSTSIRSEHDGFMRIHKKRGFTTNGSYAWIRTENAIKGLT*
Ga0177922_109833192F012670AGGMKKPKDADILFGEIRPEGSNVTDPEELEKRKHYMRMKRAEKRAMGLATGEKFPKQEASKPQQRQQKSIVNRVTEYGALFNKLNEERLAKGLPPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.