Scaffold Ga0177922_10989186

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0177922_10989186

Scaffold Ga0177922_10989186

Overview

Basic Information
Taxon OID	3300013372 Open in IMG/M
Scaffold ID	Ga0177922_10989186 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1432
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.844722	Long. (^o)	-79.573889	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015467	Metagenome	254	Y
F023588	Metagenome	209	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0177922_109891861	F015467	GGA	MRRITATIVTTLTLTIGIGTAHAAQAPKPTHSPSVTRTQVIPKESQPNIVFKHGDISWLPQLAAQAGWPPRTWKRLGQIILRESGACERRRGGDIVNKNCEVTGHDGSNHASDSGLLQINGVNYNLSRNKWAAVCLAKIACTQEPLLDALTNLRAGLVLYKIAGWSPWVVPKGGW*
Ga0177922_109891862	F023588	GAG	MVLVTWADAHSGVATWTPIDGLDKDEMLVYTCGFLLATCDGGKPEHITIYQSRTMEDDIDHVLHIPCAMVRKIAICTPDQLG*

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