NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180015_1007332

Scaffold Ga0180015_1007332


Overview

Basic Information
Taxon OID3300013392 Open in IMG/M
Scaffold IDGa0180015_1007332 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_S2_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2213
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location NameFinland: the Olkiluoto Island
CoordinatesLat. (o)61.2418Long. (o)21.4803Alt. (m)Depth (m)410
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065254Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0180015_10073323F065254N/AVALNKGSEQAEKASVATETLLWGCPITNFKATLPFNRMNQSRRGGIAAFKKRPHGPALARFKGYN*

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