Scaffold Ga0120195_1000578

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120195_1000578

Scaffold Ga0120195_1000578

Overview

Basic Information
Taxon OID	3300013500 Open in IMG/M
Scaffold ID	Ga0120195_1000578 Open in IMG/M
Source Dataset Name	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T4.rep2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1342
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial → Terrestrial Microbial Communites From A Soil Warming Plot In Okalahoma, Usa

Source Dataset Sampling Location
Location Name	USA: Kessler Farm Field Laboratory (KFFL), Okalahoma
Coordinates	Lat. (^o)	34.975667	Long. (^o)	-97.519	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011106	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120195_10005783	F011106	AGG	MMQNTDTQGLQSKAEACLAPLKEEKLVTRIAVLSTSLGQGKITRRLMIGMSIETHKTSPDFDQKKCNQAKSRIMRALGDIDCDVFIEMDR*

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